Batkovic had a scholarship with and played for the Australian Institute of Sport in 1996, 1997 and 1998/1999. She won a WNBL Championship with the team during the 1998/1999 season. She played for the Sydney Panthers in 1999/2000 and 2000/2001 seasons, winning WNBL Championship in 2000/2001. She played for the Townsville Fire in 2001/2002. She played for the Sydney Uni Flames during the 2009/2010 season. That season, she was named to the WNBL's All-Star Five. She was the league's Top Shooter, averaging 24.6 points per game. In a 101-49 win for her team over the Australian Institute of Sport, she scored 21 points. In an October 2009 game against the Adelaide Lightning, she scored 29 points. In an October 2009 game against the AIS, she had 21 points, nine rebounds, five assists and three blocks. Her field goal percentage in the AIS game was 40%. She went 9 for 10 at the free throw line. She joined the Canberra Capitals for the 2010/2011 season, missing several games early in the season due to injury. She was named the WNBL player of the week in rounds 12 and 17. The team were runners up in the league's Grand Finals. She played for the Adelaide Lightning in 2011/2012. In an October 2011 game against the Australian Institute of Sport, she scored 22 points in a 97-47 win for Adelaide. Her team lost to the Dandenong Rangers in the preliminary finals. She played center this season. She was the WNBL League MVP in 2011/2012. She was also named to the WNBL's All-Star Five. This was only the second time in her WNBL career she had earned this honour.